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16 repos shown

Topic: bioinformatics

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Promote a GitHub repo at the top of Awesome repository list views for 7 days.

plotly/dash

Data Apps & Dashboards for Python. No JavaScript Required.

AI dev

Stack

Python Celery FastAPI Flask pytest npm pip Yarn

GitHub topics

#ai #bioinformatics #charting #dash #dashboards #data-science

Updated: 2026-09-04
Lists: 2 list mentions
First commit: 2015-04-10
History: 7 history points
License: MIT
Issues: 532 open

24,397

stars

Forks: 2,317
Commits: 10,087 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

biopython/biopython

Official git repository for Biopython (originally converted from CVS)

Stack

Python pip uv

GitHub topics

#bioinformatics #biopython #dna #genomics #phylogenetics #protein

Updated: 2026-09-04
Lists: 1 list mention
First commit: 1999-12-08
History: 10 history points
License: NOASSERTION
Issues: 608 open

5,189

stars

Forks: 1,945
Commits: 16,335 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

synthetic-sciences/openscience

The open-source AI workbench for scientific research

AI dev

Stack

TypeScript Electron pytest React Tailwind CSS Bun npm PEP 517

GitHub topics

#agent #ai #ai-agent #ai-scientist #bioinformatics #bun

Updated: 2026-09-10
Lists: 1 list mention
First commit: 2026-07-04
History: 1 history point
License: Apache-2.0
Issues: 21 open

3,548

stars

Forks: 472
Commits: 773 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

galaxyproject/galaxy

Data intensive science for everyone.

AI dev

Stack

Python Celery FastAPI PydanticAI pytest npm PEP 517 pip

GitHub topics

#bioinformatics #dna #genomics #hacktoberfest #ngs #pipeline

Updated: 2026-08-29
Lists: 1 list mention
First commit: 2006-11-15
History: 4 history points
License: NOASSERTION
Issues: 2,824 open

1,841

stars

Forks: 1,161
Commits: 94,156 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ClawBio/ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

AI dev

Stack

Python FastAPI Flask pip uv

GitHub topics

#ai-agents #bioinformatics #equity #genomics #local-first #openclaw

Updated: 2026-09-06
Lists: 1 list mention
First commit: 2026-02-25
History: 7 history points
License: NOASSERTION
Issues: 26 open

1,126

stars

Forks: 260
Commits: 1,390 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

danforthcenter/plantcv

Plant phenotyping with image analysis

Stack

Python pytest PEP 517 pip

GitHub topics

#bioinformatics #image-analysis #plant-phenotyping #plantcv #science

Updated: 2026-08-07
Lists: 1 list mention
First commit: 2014-03-08
History: 4 history points
License: MPL-2.0
Issues: 126 open

813

stars

Forks: 292
Commits: 9,522 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

cafferychen777/mLLMCelltype

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

Stack

Python pytest PEP 517

GitHub topics

#bioinformatics #cell-type-annotation #computational-biology #consensus-algorithm #large-language-models #llm

Updated: 2026-08-18
Lists: 1 list mention
First commit: 2025-04-07
History: 6 history points
License: MIT
Issues: 3 open

657

stars

Forks: 57
Commits: 514 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

genomoncology/biomcp

BioMCP: Biomedical Model Context Protocol

AI dev

Stack

Rust Axum pytest Cargo PEP 517 uv

GitHub topics

#ai #bioinformatics #clinical-trials #genomics #llm #mcp

Updated: 2026-09-16
Lists: 1 list mention
First commit: 2025-04-01
History: 9 history points
License: MIT
Issues: 3 open

633

stars

Forks: 115
Commits: 3,844 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

Martinsos/edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Stack

C++ CMake Meson pip

GitHub topics

#alignment-path #bioinformatics #c-plus-plus #edit-distance #levehnstein-distance #library

Updated: 2025-05-13
Lists: 1 list mention
First commit: 2014-01-19
History: 2 history points
License: MIT
Issues: 68 open

602

stars

Forks: 173
Commits: 262 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ababaian/serratus

Ultra-deep search for novel viruses

Stack

Jupyter Notebook pip

GitHub topics

#aws #bioinformatics #coronavirus #covid19 #open-science #sars-cov-2

Updated: 2023-03-29
Lists: 1 list mention
First commit: 2020-03-02
History: 7 history points
License: GPL-3.0
Issues: 40 open

277

stars

Forks: 34
Commits: 895 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

globalbioticinteractions/globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

Stack

Java Maven

GitHub topics

#biodiversity #bioinformatics #biology #diet #diseases #ecoinformatics

Updated: 2026-09-02
Lists: 1 list mention
First commit: 2011-09-28
History: 7 history points
License: GPL-3.0
Issues: 440 open

145

stars

Forks: 17
Commits: 5,210 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

10XGenomics/enclone

VDJ Clonotyping & Analysis Tools

Stack

Rust Cargo

GitHub topics

#bioinformatics

Updated: 2025-03-07
Lists: 1 list mention
First commit: 2020-01-06
History: 4 history points
License: NOASSERTION
Issues: 4 open

stars

Forks: 15
Commits: 1,467 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

cafferychen777/ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

Stack

Python pytest PEP 517 pip

GitHub topics

#agentic-ai #bioinformatics #cell-communication #claude-desktop #computational-biology #deconvolution

Updated: 2026-08-03
Lists: 1 list mention
First commit: 2025-05-06
History: 8 history points
License: MIT
Issues: 13 open

stars

Forks: 12
Commits: 968 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

connerlambden/bgpt-mcp

Scientific paper evidence search for ChatGPT, MCP, REST, Python, and AI agents.

AI dev

Stack

JavaScript Express npm

GitHub topics

#ai #ai-agents #arxiv #bioinformatics #evidence-synthesis #literature-review

Updated: 2026-07-06
Lists: 1 list mention
First commit: 2026-02-17
History: 7 history points
License: MIT
Issues: 4 open

stars

Forks: 9
Commits: 22 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ammawla/encode-toolkit

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

AI dev

Stack

Python pytest npm PEP 517

GitHub topics

#ai #ai-agents #ai-bio #bioinformatics #bioinformatics-tool #claude

Updated: 2026-07-26
Lists: 1 list mention
First commit: 2026-03-08
History: 9 history points
License: AGPL-3.0
Issues: 2 open

stars

Forks: 5
Commits: 53 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

GitHub

hlydecker/ucsc-genome-mcp

An MCP server to interact with the UCSC Genome Browser API

Stack

Python PEP 517 pip

GitHub topics

#bioinformatics #genetics #mcp #mcp-server

Updated: 2025-11-13
Lists: 1 list mention
First commit: 2025-11-13
History: 7 history points
License: MIT
Issues: 0 open

stars

Forks: 4
Commits: 11 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

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