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15 repos shown

Topic: bioinformatics

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plotly/dash

Data Apps & Dashboards for Python. No JavaScript Required.

AI dev

Stack

Python Celery FastAPI Flask pytest npm pip Yarn

GitHub topics

#ai #bioinformatics #charting #dash #dashboards #data-science

Updated: 2026-07-10
Lists: 2 list mentions
First commit: 2015-04-10
History: 5 history points
License: MIT
Issues: 543 open

24,307

stars

Forks: 2,307
Commits: 9,902 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

biopython/biopython

Official git repository for Biopython (originally converted from CVS)

Stack

Python pip uv

GitHub topics

#bioinformatics #biopython #dna #genomics #phylogenetics #protein

Updated: 2026-07-06
Lists: 1 list mention
First commit: 1999-12-08
History: 8 history points
License: NOASSERTION
Issues: 604 open

5,113

stars

Forks: 1,923
Commits: 16,307 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

galaxyproject/galaxy

Data intensive science for everyone.

AI dev

Stack

Python Celery FastAPI PydanticAI pytest npm PEP 517 pip

GitHub topics

#bioinformatics #dna #genomics #hacktoberfest #ngs #pipeline

Updated: 2026-07-09
Lists: 1 list mention
First commit: 2006-11-15
History: 2 history points
License: NOASSERTION
Issues: 2,780 open

1,807

stars

Forks: 1,162
Commits: 93,092 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ClawBio/ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

AI dev

Stack

Python FastAPI Flask pip uv

GitHub topics

#ai-agents #bioinformatics #equity #genomics #local-first #openclaw

Updated: 2026-07-14
Lists: 1 list mention
First commit: 2026-02-25
History: 5 history points
License: MIT
Issues: 13 open

1,039

stars

Forks: 224
Commits: 1,150 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

danforthcenter/plantcv

Plant phenotyping with image analysis

Stack

Python pytest PEP 517 pip

GitHub topics

#bioinformatics #image-analysis #plant-phenotyping #plantcv #science

Updated: 2026-07-16
Lists: 1 list mention
First commit: 2014-03-08
History: 3 history points
License: MPL-2.0
Issues: 121 open

804

stars

Forks: 292
Commits: 9,520 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

cafferychen777/mLLMCelltype

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

Stack

Python pytest PEP 517

GitHub topics

#bioinformatics #cell-type-annotation #computational-biology #consensus-algorithm #large-language-models #llm

Updated: 2026-07-19
Lists: 1 list mention
First commit: 2025-04-07
History: 5 history points
License: MIT
Issues: 10 open

651

stars

Forks: 57
Commits: 488 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

Martinsos/edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Stack

C++ CMake Meson pip

GitHub topics

#alignment-path #bioinformatics #c-plus-plus #edit-distance #levehnstein-distance #library

Updated: 2025-05-13
Lists: 1 list mention
First commit: 2014-01-19
History: 1 history point
License: MIT
Issues: 68 open

601

stars

Forks: 173
Commits: 262 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

genomoncology/biomcp

BioMCP: Biomedical Model Context Protocol

AI dev

Stack

Rust Axum pytest Cargo PEP 517 uv

GitHub topics

#ai #bioinformatics #clinical-trials #genomics #llm #mcp

Updated: 2026-07-16
Lists: 1 list mention
First commit: 2025-04-01
History: 7 history points
License: MIT
Issues: 0 open

548

stars

Forks: 108
Commits: 2,049 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ababaian/serratus

Ultra-deep search for novel viruses

Stack

Jupyter Notebook pip

GitHub topics

#aws #bioinformatics #coronavirus #covid19 #open-science #sars-cov-2

Updated: 2023-03-29
Lists: 1 list mention
First commit: 2020-03-02
History: 5 history points
License: GPL-3.0
Issues: 40 open

275

stars

Forks: 35
Commits: 895 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

globalbioticinteractions/globalbioticinteractions

Global Biotic Interactions provides access to existing species interaction datasets

Stack

Java Maven

GitHub topics

#biodiversity #bioinformatics #biology #diet #diseases #ecoinformatics

Updated: 2026-07-09
Lists: 1 list mention
First commit: 2011-09-28
History: 5 history points
License: GPL-3.0
Issues: 428 open

144

stars

Forks: 18
Commits: 4,921 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

10XGenomics/enclone

VDJ Clonotyping & Analysis Tools

Stack

Rust Cargo

GitHub topics

#bioinformatics

Updated: 2025-03-07
Lists: 1 list mention
First commit: 2020-01-06
History: 3 history points
License: NOASSERTION
Issues: 4 open

stars

Forks: 15
Commits: 1,467 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

Website GitHub

cafferychen777/ChatSpatial

MCP server for spatial transcriptomics analysis through natural language interfaces.

Stack

Python pytest PEP 517 pip

GitHub topics

#agentic-ai #bioinformatics #cell-communication #claude-desktop #computational-biology #deconvolution

Updated: 2026-07-16
Lists: 1 list mention
First commit: 2025-05-06
History: 7 history points
License: MIT
Issues: 13 open

stars

Forks: 11
Commits: 958 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

connerlambden/bgpt-mcp

Scientific paper evidence search for ChatGPT, MCP, REST, Python, and AI agents.

AI dev

Stack

JavaScript Express npm

GitHub topics

#ai #ai-agents #arxiv #bioinformatics #evidence-synthesis #literature-review

Updated: 2026-07-06
Lists: 1 list mention
First commit: 2026-02-17
History: 7 history points
License: MIT
Issues: 4 open

stars

Forks: 9
Commits: 22 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

Website GitHub

ammawla/encode-toolkit

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

AI dev

Stack

Python pytest npm PEP 517

GitHub topics

#ai #ai-agents #ai-bio #bioinformatics #bioinformatics-tool #claude

Updated: 2026-06-21
Lists: 1 list mention
First commit: 2026-03-08
History: 7 history points
License: AGPL-3.0
Issues: 0 open

stars

Forks: 5
Commits: 53 commits
Star growth, last 7 days: No 7-day history
Commit velocity, last 7 days: No 7-day history

GitHub

hlydecker/ucsc-genome-mcp

An MCP server to interact with the UCSC Genome Browser API

Stack

Python PEP 517 pip

GitHub topics

#bioinformatics #genetics #mcp #mcp-server

Updated: 2025-11-13
Lists: 1 list mention
First commit: 2025-11-13
History: 6 history points
License: MIT
Issues: 1 open

stars

Forks: 4
Commits: 11 commits
Star growth, last 7 days: 0 0.0%
Commit velocity, last 7 days: 0 0.0%

GitHub

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